Classification of archaic rice grains excavated at the Mojiaoshan site within the Liangzhu site complex reveals an Indica and Japonica chloroplast complex

Table 5 Classification by sequence type in chloroplast genome regions

Rice type	No. of^a grains/ accessions	trnI^b	rps16^b intron1	Orf100^b
Rice type	No. of^a grains/ accessions	SNP	In/del	In/del
Modern
Japonica	13	A	–	Insertion
Japonica	1	A	Insertion	–
Indica	17	G	Insertion	–
Indica	1	G	–	–
Indica	1	G	–	Insertion
Archaic rice grains at West trench
I	1	A	–	Insertion
II	2	A	UN	Insertion
III	1	A	Insertion	UN
IV	7	A	UN	UN
V	1	G	UN	Insertion
VI	1	G	UN	UN
VII	4	UN	UN	Insertion
VIII	3	UN	–	Insertion

^aNumerical number indicates number of accessions in modern Japonica and Indica
^bUN Sequence was not Not detected because of DNA fragmentation, −: Not insertion type

ISSN: 2661-8974